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Biology & Biological Sciences

Intro

What is Biology & Biological Sciences?

Biology is the fascinating and ever-expanding field dedicated to studying life on Earth. It encompasses all living organisms, from the microscopic world of bacteria to the towering giants of the redwood forest. Biologists delve into the structure, function, growth, origin, evolution, and distribution of life across the planet.

What are the main topics involved with Biology & Biological Sciences?

  • Biochemistry: Focuses on the chemistry of life, exploring the structure, function, and interactions of molecules essential for biological processes.
  • Cell Biology: Examines the fundamental unit of life, the cell, its structure, function, and how different cell types work together in an organism.
  • Genetics: Investigates genes, heredity, and how traits are passed down from generation to generation.
  • Microbiology: Studies microscopic organisms like bacteria, archaea, viruses, and fungi, and their impact on health and the environment.
  • Molecular Biology: Zooms in on the role of molecules like DNA and RNA in cellular processes and heredity.
  • Zoology: Delves into the animal kingdom, its diversity, behavior, evolution, and conservation.
  • Botany: Focuses on plants, their structure, physiology, ecology, and evolution.
  • Ecology: Examines the interactions between living organisms and their environment, including how populations, communities, and ecosystems function.
  • Evolutionary Biology: Studies how living things change over time and the mechanisms that drive this change, such as natural selection.

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What are the skills related to work experience in the field of Biology & Biological Sciences?

What are the Worldsupporter goals related to Biology & Biological Sciences?

  • See the worldsupporter goals for better understanding of another culture or person, improvement of world tolerance, sharing knowledge and know how worldwide, stimulating personal development around and abroad, and stimulating activities abroad to improve the ability to cooperate
  • See debates for discussions around related topics

   

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What is biology?

What is biology?

Biology is the fascinating and ever-expanding field dedicated to studying life on Earth. It encompasses all living organisms, from the microscopic world of bacteria to the towering giants of the redwood forest. Biologists delve into the structure, function, growth, origin, evolution, and distribution of life across the planet.

What are the main features of biology?

  • Diversity of Life: Biology celebrates the incredible variety of life forms, from single-celled organisms to complex ecosystems teeming with interacting species.
  • Unity in Diversity: Despite this vast diversity, there are unifying principles that tie all living things together. These include the use of DNA as genetic material and the processes of cellular respiration and photosynthesis, which power life.
  • Scientific Approach: Biologists rely on the scientific method to ask questions about living things. They gather evidence through observation and experimentation, and form testable hypotheses to understand the natural world.

What are important sub-areas in biology?

Due to the immense breadth of biology, specialization is essential. Here are some of the most prominent sub-areas:

  • Biochemistry: Focuses on the chemistry of life, exploring the structure, function, and interactions of molecules essential for biological processes.
  • Cell Biology: Explores the fundamental unit of life, the cell. It examines cell structure, function, and how different cell types work together in an organism.
  • Genetics: Investigates genes, heredity, and how traits are passed down from generation to generation.
  • Microbiology: Studies microscopic organisms like bacteria, archaea, viruses, and fungi, and their impact on health and the environment.
  • Molecular Biology: Zooms in on the role of molecules like DNA and RNA in cellular processes and heredity.
  • Zoology: Delves into the animal kingdom, its diversity, behavior, evolution, and conservation.
  • Botany: Focuses on plants, their structure, physiology, ecology, and evolution.
  • Ecology: Examines the interactions between living organisms and their environment, including how populations, communities, and ecosystems function.
  • Evolutionary Biology: Studies how living things change over time and the mechanisms that drive this change, such as natural selection.

What are key concepts in biology?

  • Cell Theory: The cornerstone of biology, stating that all living things are composed of cells, the basic units of life.
  • DNA: Deoxyribonucleic acid, the molecule that carries genetic information and is responsible for heredity.
  • Evolution by Natural Selection: The theory proposed by Charles Darwin, explaining how organisms with favorable traits are more likely to survive and reproduce, leading to evolution of populations over time.
  • Homeostasis: The ability of an organism or a biological system to maintain a stable internal environment despite external changes.
  • Metabolism: The sum of all chemical reactions that occur in living organisms, allowing them to grow, reproduce, maintain their structure, and respond to their environment.

Who are influential figures in biology?

  • Louis Pasteur: A French microbiologist whose discoveries on vaccines and fermentation had a profound impact on public health.
  • Charles Darwin: A British naturalist who revolutionized our understanding of life with his theory of evolution by natural selection.
  • Gregor Mendel: An Austrian monk considered the father of genetics for his pioneering work on inheritance
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Developmental Biology: The best concepts summarized

Developmental Biology: The best concepts summarized

Developmental Biology: The best concepts summarized

A short introduction to the best concepts of developmental biology: From a zygote to a vertebrate.

What is developmental biology?

What is developmental biology?

Developmental biology is the scientific study of how organisms grow and develop from a single cell (zygote) to their final form. It explores the underlying genetic and environmental factors that shape the development of various tissues, organs, and body structures.

What are the main features of developmental biology?

  • Interdisciplinary field: It draws on insights from genetics, molecular biology, cell biology, embryology, and evolutionary biology.
  • Focus on pattern formation: It investigates how cells organize themselves into specific patterns and structures during development.
  • Key stages of development: Developmental biologists study key stages of development, including fertilization, cleavage, gastrulation, organogenesis, and metamorphosis.

Why is developmental biology important?

  • Understanding life processes: It provides fundamental insights into the mechanisms that govern the growth and development of all living organisms.
  • Medical applications: Developmental biology has significant implications for medical research, including the study of birth defects, regenerative medicine, and cancer biology.
  • Evolutionary biology: It helps us understand the evolutionary origins of different body plans and the genetic changes that underlie them.

What are applications of developmental biology?

  • Stem cell research: Understanding developmental processes can help us harness the potential of stem cells for regenerative medicine.
  • Cancer research: Studying developmental pathways can shed light on the mechanisms that drive cancer development and progression.
  • Drug discovery: Developmental biology can be used to identify new drug targets for treating diseases related to developmental defects.
  • Agricultural biotechnology: Understanding plant development can help improve crop yields and resistance to pests and diseases.

Example

One classic example of developmental biology research is the study of Drosophila melanogaster (fruit flies). Fruit flies have been used extensively as a model organism to investigate the genetic basis of development, providing valuable insights into fundamental developmental processes.

Critical comments

  • Complexity: Developmental processes are highly complex and involve a multitude of interacting factors.
  • Ethical considerations: Research on embryonic development raises ethical concerns, particularly when involving human embryos or stem cells.
  • Species-specific differences: While many developmental principles are conserved across species, there can be significant differences in the details of development.
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What is biological ethics?

What is biological ethics?

Biological ethics is a branch of applied ethics that deals with moral issues arising from the study and application of biology. It encompasses a wide range of topics, including:

  • Genetics: Issues related to genetic testing, genetic engineering, and gene therapy
  • Medicine: Ethical considerations in medical research, patient autonomy, and end-of-life care
  • Animal welfare: Ethical treatment of animals in research, agriculture, and entertainment
  • Environmental ethics: Issues related to biodiversity conservation, climate change, and sustainable resource use

What are the main features of biological ethics?

  • Interdisciplinary nature: It draws on insights from philosophy, sociology, law, and other disciplines.
  • Complex issues: Biological ethics often involves complex moral dilemmas with no easy solutions.
  • Balancing competing interests: Biological ethics seeks to balance the interests of individuals, animals, and society as a whole.

Why is biological ethics important?

  • Guiding research and practice: Biological ethics provides a framework for making morally sound decisions in scientific research and medical practice.
  • Protecting human rights: It helps to protect the rights of individuals, such as the right to privacy and informed consent.
  • Promoting animal welfare: It ensures that animals are treated ethically in research, agriculture, and other contexts.
  • Addressing environmental concerns: It helps to address pressing environmental issues, such as climate change and biodiversity loss.

What are applications of biological ethics?

  • Informed consent: Ensuring that individuals provide informed consent for medical procedures and research participation.
  • Animal welfare guidelines: Developing and enforcing guidelines for the ethical treatment of animals in research and other settings.
  • Genetic counseling: Providing guidance to individuals and families facing genetic health issues.
  • Policy development: Developing policies related to issues such as stem cell research, gene editing, and environmental conservation.

Example

A classic example of a biological ethics dilemma is the debate over stem cell research. While embryonic stem cells offer great potential for medical advancements, their use raises ethical concerns about the destruction of human embryos. Biological ethics can help to navigate this complex issue by considering the potential benefits and harms of different approaches.

Critical comments

  • Cultural and religious differences: Biological ethics can be influenced by cultural and religious beliefs, which can make it challenging to reach universal consensus.
  • Rapid technological advancements: The rapid pace of technological advancements in biology can outpace the development of ethical guidelines, creating a need for ongoing reflection and adaptation.
  • Subjectivity: Some aspects of biological ethics involve subjective judgments about values and priorities, which can make it difficult to reach definitive conclusions.
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What is a zygote?

What is a zygote?

A zygote is the single-celled organism that forms when a sperm cell fertilizes an egg cell. It represents the initial stage of life for a new individual.  

What are the main features of a zygote?

  • Diploid: Contains a complete set of chromosomes, half from each parent.  
  • Totipotent: Has the potential to develop into any type of cell in the body.
  • Undergoes rapid division: The zygote undergoes a process called cleavage, where it rapidly divides into multiple cells.  

Why is the zygote important?

  • Genetic blueprint: It carries the genetic information that will determine the traits of the developing organism.  
  • Foundation of development: The zygote is the starting point for the entire process of embryonic development.  
  • Basis of reproduction: The formation of a zygote is essential for sexual reproduction.

What are the applications of zygote research?

  • In vitro fertilization (IVF): Zygotes are created in a laboratory setting to assist in fertility treatments.
  • Stem cell research: Zygotes can be used to derive embryonic stem cells, which have the potential to differentiate into various cell types.
  • Genetic testing: Zygotes can be tested for genetic disorders before implantation, a process known as preimplantation genetic diagnosis (PGD).  

Example

A fertilized human egg cell is a zygote. It begins its journey through the fallopian tube, eventually implanting in the uterine wall and developing into an embryo.  

Critical comments

  • Ethical concerns: The use of zygotes in research, particularly embryonic stem cell research, raises ethical questions about the beginning of life and the destruction of potential human beings.
  • Limitations: While zygotes have immense potential, their development is influenced by a complex interplay of genetic and environmental factors, making it difficult to fully understand and control.
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What is Sonic hedgehog?

What is Sonic hedgehog?

Sonic hedgehog (Shh) is a secreted signaling protein that plays a crucial role in embryonic development and tissue patterning in various organisms. It is a member of the Hedgehog family of proteins, which are highly conserved across different species.

What are the main features of Sonic hedgehog?

  • Morphogen: Shh acts as a morphogen, meaning it can influence the development of different cell types and tissues based on its concentration gradient.
  • Patterning: Shh is involved in the patterning of various structures, including the nervous system, limbs, and facial features.
  • Regulation: The activity of Shh is tightly regulated by a complex network of signaling pathways and feedback mechanisms.

What is the importance of Sonic hedgehog?

Shh is essential for proper embryonic development and the formation of various organs and tissues. Dysregulation of Shh signaling can lead to birth defects and developmental disorders.

What are the applications of Sonic hedgehog in practice?

Understanding Shh signaling has significant implications for medicine and research. Some applications include:

  • Stem cell research: Shh can be used to induce the differentiation of stem cells into various cell types, such as neurons and muscle cells.
  • Cancer research: Shh signaling is implicated in the development and progression of certain types of cancer, and targeting Shh pathways may be a potential therapeutic strategy.
  • Developmental biology: Studying Shh signaling can help researchers understand the mechanisms that underlie the formation of complex structures and patterns during embryonic development.

Example

A well-known example of Shh signaling is its role in limb development. Shh is produced in the zone of polarizing activity (ZPA) at the posterior end of the limb bud. The concentration gradient of Shh across the limb bud helps to determine the patterning of digits, with the thumb being formed by cells exposed to the highest concentration of Shh and the pinky finger being formed by cells exposed to the lowest concentration.

Critical comments

While Shh is a well-studied signaling molecule, there are still many unanswered questions about its precise mechanisms of action and regulation. Further research is needed to fully understand the complex interactions between Shh and other signaling pathways that contribute to embryonic development and tissue patterning.

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Genomics: The best concepts summarized

Genomics: The best concepts summarized

Genomics: The best concepts summarized

A short introduction to the best concepts of genomics: From chromatides to evolution.

What are chromosomes?

What are chromosomes?

Chromosomes are the tightly packaged structures within a cell's nucleus that carry an organism's genetic information. They are made up of DNA (deoxyribonucleic acid) and proteins, and act like an instruction manual containing the blueprints for building and maintaining an organism.

What are the key features of chromosomes?

  • DNA Carriers: Chromosomes are composed primarily of DNA, the molecule that encodes the instructions for building and regulating an organism. Each chromosome carries a specific set of genes.
  • Linear Structure: DNA within a chromosome is not randomly packed but rather organized in a linear fashion. This linear arrangement determines gene order and plays a role in gene expression.
  • Number Variation: The number of chromosomes varies between species. Humans have 46 chromosomes (23 pairs), while fruit flies have only 8 and some fern species have hundreds.
  • Duplication and Segregation: Before cell division, chromosomes replicate themselves to ensure each daughter cell receives a complete set of genetic information. During cell division, chromosomes segregate (separate) and are distributed equally to the daughter cells.

What is the importance of chromosomes?

Chromosomes are essential for life as we know it. They play a crucial role in:

  • Heredity: Chromosomes are passed from parents to offspring during reproduction, ensuring the inheritance of genetic traits.
  • Gene Expression: The genes located on chromosomes contain the instructions for making proteins, the building blocks and functional molecules within cells. Chromosomes influence which genes are turned on or off at specific times and locations within an organism.
  • Cell Division: Proper replication and segregation of chromosomes during cell division ensure each new cell receives a complete set of genetic information.

What are the applications of chromosomes in practice?

  • Karyotyping: Analyzing chromosome number and structure can identify chromosomal abnormalities linked to genetic disorders like Down syndrome.
  • Genetic Testing: Examining specific genes on chromosomes can help identify individuals at risk for certain inherited diseases.
  • Prenatal Diagnosis: Techniques like amniocentesis can analyze fetal chromosomes to identify potential genetic abnormalities before birth.
  • Gene Mapping: Identifying the location of specific genes on chromosomes is crucial for understanding gene function and developing new therapies.

Practical example

Think of a chromosome as a long string of beads, where each bead represents a gene. The order of the beads (genes) is crucial. In humans, one pair of chromosomes determines sex (XX for females, XY for males). During reproduction, each parent contributes one chromosome from this pair to their offspring, influencing the child's sex.

Critical remarks

  • Chromosomal Abnormalities: Errors in chromosome number or structure can lead to various genetic disorders. These may involve missing or extra chromosomes, or rearrangements within a chromosome.
  • Gene Regulation Complexity: While chromosomes house the genetic blueprint, understanding how genes are turned on and off at specific times and locations remains a complex area of research.
  • Ethical Considerations: Advances in chromosome manipulation raise ethical concerns, such as the potential for creating designer babies with specific traits.
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What is mitosis?

What is mitosis?

Mitosis is a fundamental process by which a eukaryotic cell duplicates its genetic material (DNA) and divides to form two daughter cells. These daughter cells are genetically identical to the parent cell and possess the same number of chromosomes.

What are the key features of mitosis?

  • Accurate Replication: Mitosis ensures the faithful duplication and distribution of chromosomes, maintaining genetic stability from generation to generation.
  • Ordered Stages: Mitosis is a precisely choreographed sequence of events, typically divided into five phases: prophase, prometaphase, metaphase, anaphase, and telophase.
  • Mitotic Apparatus: Microtubules, protein structures, form the mitotic spindle, a crucial apparatus that orchestrates chromosome movement during cell division.

What is the importance of mitosis?

Mitosis is essential for life as we know it. It underpins several critical processes:

  • Growth and Development: Enables multicellular organisms to grow and develop from a single fertilized egg into complex tissues and organs.
  • Tissue Repair: Mitosis allows tissues to repair themselves after injury by replacing damaged cells.
  • Asexual Reproduction: Mitosis is the sole mechanism for cell division in asexual reproduction, resulting in offspring genetically identical to the parent.

What are the applications of mitosis in practice?

  • Cancer Treatment: Understanding mitosis is vital in cancer research, as uncontrolled cell division is a hallmark of the disease. Therapies targeting mitosis can potentially halt cancer progression.
  • Regenerative Medicine: Mitosis plays a role in tissue regeneration, and researchers are exploring ways to stimulate mitosis for therapeutic purposes, such as healing wounds or damaged organs.
  • Cell Culture: Mitosis enables the large-scale growth of cells in culture dishes, a vital tool for biological research and drug discovery.

Practical example

The growth of skin cells provides a relatable example of mitosis. As our skin is constantly exposed to wear and tear, basal cells in the lower layer of the epidermis undergo mitosis to generate new skin cells that replace old or damaged ones, maintaining a healthy outer layer.

Critical remarks

  • Errors in Mitosis: Errors during mitosis can lead to genetic mutations and chromosomal abnormalities, potentially contributing to cancer and other diseases.
  • Regulation of Mitosis: Tight regulation of mitosis is essential for proper development and tissue homeostasis. Disruptions in this regulation can have detrimental consequences.
  • Incomplete Knowledge: Despite extensive research, there's still much to learn about the intricate control mechanisms governing mitosis.
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What is meiosis?

What is meiosis?

Meiosis is a specialized cell division process that shuffles genetic material to create four genetically unique daughter cells, each with half the number of chromosomes compared to the parent cell. This process is vital for sexual reproduction in eukaryotes.

What are the key features of meiosis?

  • Two Meiotic Divisions: Meiosis consists of two consecutive cell divisions, meiosis I and meiosis II, resulting in four haploid daughter cells from a single diploid parent cell.
  • Genetic Shuffling: During meiosis I, homologous chromosomes undergo crossing over, exchanging genetic material between them. This, along with the random segregation of chromosomes, leads to genetic variation in the daughter cells.
  • Haploid Gametes: Meiosis produces haploid gametes (eggs and sperm) with half the number of chromosomes as the parent cell. Fertilization, the fusion of sperm and egg, restores the diploid chromosome number in the offspring.

What is the importance of meiosis?

Meiosis plays a critical role in sexual reproduction by:

  • Genetic Diversity: It introduces genetic variation in offspring, which is essential for adaptation and evolution. Offspring inherit a unique combination of genes from both parents, allowing populations to adapt to changing environments.
  • Haploid Gametes: Meiosis ensures the formation of haploid gametes, which is necessary for fertilization and the creation of a diploid zygote in the next generation.

What are the applications of meiosis in practice?

  • Genetic Engineering: Understanding meiosis is crucial in manipulating genes during the development of genetically modified organisms.
  • In Vitro Fertilization (IVF): Meiosis is considered during assisted reproductive techniques like IVF, where understanding sperm and egg formation is essential.
  • Evolutionary Studies: Meiosis is a key factor in generating genetic diversity, which researchers study to understand the process of evolution and speciation.

Practical example

Imagine a pea plant with flower color determined by two genes. Meiosis in the pea plant's stamen cells (pollen-producing organs) shuffles these genes. The resulting pollen grains will have various combinations of these genes, leading to offspring with potentially different flower colors compared to the parent plant.

Critical remarks

  • Errors in Meiosis: Errors during meiosis, such as nondisjunction (chromosomes failing to separate properly), can result in offspring with abnormal chromosome numbers, potentially leading to genetic disorders like Down syndrome.
  • Regulation Complexity: The intricate regulation of chromosome pairing and segregation during meiosis is still being unraveled by scientists.
  • Environmental Influences: Environmental factors like radiation exposure can potentially impact meiosis and increase the risk of chromosomal abnormalities.
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What is a virus?

What is a virus?

A virus is a tiny, infectious agent that can only reproduce inside the living cells of an organism. Viruses are much smaller than bacteria and far simpler in structure. They lack the machinery needed to replicate on their own and rely on host cells to provide the necessary resources.

  • Viruses come in various shapes and sizes, but all share some common features:
    • Genetic material: They contain either DNA or RNA as their genetic material, but never both.
    • Protein capsid: A protective protein shell surrounds the genetic material.
    • (Some viruses also have an) Envelope: A membranous layer derived from the host cell surrounds the capsid in some viruses.

What are the main features of a virus?

  • Obligate parasites: Viruses cannot reproduce on their own. They invade host cells, hijack cellular machinery, and use it to produce new viral particles.
  • Specificity: Different viruses have specific host ranges, meaning they can only infect particular types of cells or organisms.
  • High mutation rate: Viral genomes can mutate rapidly, allowing them to evolve and evade host defenses.

Why is a virus important?

  • Viruses are the most abundant biological entity on Earth and play a significant role in ecosystems.
  • They cause a wide range of diseases in humans, animals, and plants, impacting global health and agriculture.
  • Studying viruses is crucial for developing vaccines, antiviral drugs, and understanding fundamental biological processes.

What are the applications of a virus in practice?

  • Vaccinations: Vaccines work by exposing the body to weakened or inactive forms of a virus, stimulating the immune system to develop immunity and prevent future infections.
  • Gene Therapy: Viral vectors, modified viruses, can be used to deliver therapeutic genes into cells for treating genetic diseases.
  • Phage Therapy: Certain viruses (bacteriophages) specifically target and kill bacteria. This approach is being explored as an alternative to antibiotics for combating antibiotic-resistant infections.

Practical example

  • The common cold is a classic example of a viral disease. Rhinoviruses, belonging to a group of single-stranded RNA viruses, are the most frequent culprits. These viruses infect the upper respiratory tract, causing symptoms like runny nose, sore throat, and coughing.

Critical comments

  • Viral infections can range from mild to life-threatening, and some viruses lack effective treatments.
  • The rapid evolution of viruses poses a constant challenge in developing vaccines and antiviral drugs.
  • The misuse of viral vectors in gene therapy raises biosafety concerns.
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What is evolution?

What is evolution?

Evolution is the cornerstone of biology, explaining the incredible diversity of life on Earth. Evolution is the change in the heritable characteristics of biological populations over successive generations. This change is driven by various mechanisms, primarily natural selection.

What are the main features of evolution?

  • Descent with Modification: All living things share a common ancestor, and over time, populations have diverged through modifications in their heritable traits.
  • Variation: Individuals within a population exhibit variations in their traits, which arise from genetic differences.
  • Natural Selection: Traits that enhance survival and reproduction become more common in a population over generations. This doesn't necessarily imply progress towards "better" but rather adaptation to the environment.
  • Genetic Drift: Random changes in gene frequencies within a population can also contribute to evolution.

Why is evolution important?

  • Evolution explains the origin of species, the intricate adaptations seen in living organisms, and their relationships to each other.
  • It provides a framework for understanding how life has changed and continues to change on Earth.
  • Evolutionary principles are crucial in various fields like medicine (antibiotic resistance), agriculture (pest control), and conservation biology.

What are applications of evolution in practice?

  • Drug Discovery: Studying how pathogens evolve resistance to drugs helps develop new strategies to combat infections.
  • Pest Management: Understanding how insects evolve resistance to pesticides allows for developing more sustainable control methods.
  • Conservation Biology: Evolutionary principles guide conservation efforts to protect endangered species and maintain biodiversity.

Practical example

  • The evolution of antibiotic resistance in bacteria is a classic example. When exposed to antibiotics, some bacteria with random mutations that provide resistance survive and reproduce. Over generations, these resistant bacteria become more common in the population, posing a significant challenge in medicine.

Critical comments

  • Evolution is a slow process that can be difficult to observe directly.
  • The theory of evolution is sometimes misunderstood or misrepresented.
  • There are ongoing debates on the role of chance vs. determinism in the evolutionary process.
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Latest

Latest blogs, jobs, projects, organizations, and tips tagged with: Biology & Biological Sciences

What is insertion?

An insertion in DNA duplication refers to a mutation that occurs during the process of copying DNA. It involves the insertion of one or more additional nucleotides (the building blocks of DNA) into a newly synthesized DNA strand.

What are the main features of insertion?

  • Mechanism: Insertions can arise due to various mechanisms, including errors by DNA polymerase during replication, the activity of transposable elements (jumping genes), or errors in DNA repair processes.
  • Size: Insertions can range from a single nucleotide to larger segments of DNA, depending on the event causing the insertion.
  • Consequences: The impact of insertions depends on their location and size. Small insertions might have minimal effects, while larger insertions can disrupt genes, alter protein function, and potentially lead to genetic diseases.

Why is insertion important?

  • Understanding insertions is crucial for studying how mutations arise and contribute to genetic variation.
  • Some insertions can be
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What is a phylogenetic tree?

A phylogenetic tree, also known as a phylogeny or evolutionary tree, is a powerful tool that visually depicts the evolutionary relationships between organisms. It's like a family tree for all living things, but instead of parents and children, it shows how species have descended from a common ancestor over time.

What are the main features of a phylogenetic tree?

  • Branching Pattern: The branching pattern of the tree reflects the evolutionary history of the represented organisms. The further two species diverge on the tree, the longer ago their common ancestor lived.
  • Nodes and Branches: Branching points (nodes) represent the divergence of ancestral lineages into new species. The lengths of branches can sometimes indicate the amount of evolutionary change that has occurred. (Note: Branch lengths don't always signify time in some trees).
  • Rooted vs. Unrooted: Rooted trees have a designated root representing the most recent common ancestor of all organisms in
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What is Findable, Accessible, Interoperable, and Reusable data (FAIR data)?

FAIR stands for Findable, Accessible, Interoperable, and Reusable. It's a set of principles guiding researchers on how to manage their data effectively to maximize its use and impact.

What are the main features of FAIR data?

  • Findable: Data should be easy to discover through search engines and registries using persistent identifiers and rich metadata (descriptive information) that clearly describes the data content and purpose.
  • Accessible: Data should be readily available to authorized users, with minimal restrictions, considering ethical and legal limitations. Data repositories should be trustworthy and ensure data security.
  • Interoperable: Data should be understandable and usable by different software and systems, using common formats and standardized vocabularies. This allows seamless integration and analysis with other datasets.
  • Reusable: Data should be well-documented and presented clearly, allowing researchers to understand the context, methodology, and limitations of the data for reproducible research and new discoveries.

Why is FAIR Data important?

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What is horizontal gene transfer (HGT)?

Horizontal gene transfer (HGT), also known as lateral gene transfer, is a fascinating process that challenges the traditional view of inheritance. HGT refers to the movement of genetic material between organisms that are not parent and offspring. This means organisms can acquire genes from unrelated sources, expanding their genetic repertoire beyond what they inherit vertically from their ancestors.

What are the main features of horizontal gene transfer?

  • Mechanisms: HGT can occur through various mechanisms like conjugation (direct cell-to-cell contact), transduction (using viruses as vectors), and transformation (uptake of free DNA from the environment).
  • Frequency: HGT is more common in bacteria and archaea but can also occur between eukaryotes (organisms with a nucleus) under specific circumstances.
  • Impact: HGT can introduce new genes for beneficial traits like antibiotic resistance, novel metabolic pathways, or virulence factors.

Why is horizontal gene transfer important?

  • HGT is a major driver of evolution, allowing
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What is evolution?

Evolution is the cornerstone of biology, explaining the incredible diversity of life on Earth. Evolution is the change in the heritable characteristics of biological populations over successive generations. This change is driven by various mechanisms, primarily natural selection.

What are the main features of evolution?

  • Descent with Modification: All living things share a common ancestor, and over time, populations have diverged through modifications in their heritable traits.
  • Variation: Individuals within a population exhibit variations in their traits, which arise from genetic differences.
  • Natural Selection: Traits that enhance survival and reproduction become more common in a population over generations. This doesn't necessarily imply progress towards "better" but rather adaptation to the environment.
  • Genetic Drift: Random changes in gene frequencies within a population can also contribute to evolution.

Why is evolution important?

  • Evolution explains the origin of species, the intricate adaptations seen in living organisms, and their relationships to
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What is DNA mutation?

DNA mutations are alterations in the genetic code, the blueprint of life. These changes can have a profound impact on organisms. DNA mutations involve alterations in the sequence of nucleotides (building blocks) that make up DNA. This can be a single change in a base pair (point mutation) or a larger insertion, deletion, or rearrangement of DNA segments.

What are the main features of DNA mutation?

  • Types of Mutations: Mutations come in various forms, point mutations, insertions/deletions, and chromosomal rearrangements, each having different consequences.
  • Germline vs. Somatic Mutations: Germline mutations occur in reproductive cells and can be passed on to offspring, while somatic mutations happen in body cells and are not heritable.
  • Mutation Rate: The rate of mutation varies depending on the organism and environmental factors. Most mutations are harmless, but some can be beneficial or detrimental.

What is the importance of DNA mutation?

  • Mutations are the driving
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What is DNA replication?

DNA replication is the fundamental process by which a cell duplicates its entire DNA molecule. It's the foundation for cell division, ensuring each new cell inherits a complete copy of the genetic instructions. DNA replication is a tightly controlled process that faithfully copies the double-stranded DNA molecule into two identical copies. Each strand in the original DNA serves as a template for building a new complementary strand.

What are the main features of DNA replication?

  • Semiconservative Replication: Each new DNA molecule consists of one original strand and one newly synthesized strand.
  • Enzymatic Machinery: Specialized enzymes like DNA polymerase, helicase, and ligase play critical roles in unwinding, copying, and joining the DNA strands.
  • Proofreading and Repair: Mistakes during replication are rare, but enzymes exist to proofread and repair any errors for accurate copying.

Why is DNA replication important?

  • DNA replication is essential for cell division, allowing organisms to
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What is bioinformatics?

Bioinformatics is a powerful field that bridges the gap between biology and computer science. Here's a breakdown of its key aspects:

What is bioinformatics?

  • Bioinformatics uses computational tools and techniques to analyze, interpret, and manage biological data. This data can be at the level of DNA, proteins, genes, or even entire organisms.
  • Think of it as building a translator to understand the complex "language" encoded in our genetic material.

What are the main features of bioinformatics?

  • Data Management: Bioinformatics creates and maintains massive databases to store biological information.
  • Sequence Analysis: It analyzes and compares DNA and protein sequences to identify patterns, mutations, and functional elements.
  • Modeling and Simulation: Bioinformatics builds computer models to simulate biological processes and predict outcomes.
  • Visualization: It develops tools to visually represent complex biological data, making it easier to understand.

What is the importance of bioinformatics?

  • Bioinformatics is crucial for advancing our understanding
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What is RNA-sequencing?

RNA-sequencing (RNA-seq) is a powerful technique that allows researchers to comprehensively analyze the transcriptome. The transcriptome refers to the entire collection of RNA molecules (messenger RNA, ribosomal RNA, transfer RNA, and other non-coding RNAs) present within a cell, tissue, or organism at a specific point in time. By studying the transcriptome, RNA-seq offers a dynamic snapshot of gene expression, revealing which genes are actively being transcribed into RNA and at what level.

What are the key features of RNA-sequencing?

  • High-Throughput: RNA-seq utilizes next-generation sequencing (NGS) technology, enabling the simultaneous analysis of millions of RNA molecules.
  • Quantitative: It allows researchers to quantify the abundance of different RNA transcripts, providing insights into the relative activity of genes.
  • Versatility: RNA-seq can be used to study various aspects of gene expression, including mRNA levels, alternative splicing events, and non-coding RNA function.

What is the importance of RNA-sequencing?

  • Understanding Gene Regulation: By
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What is Sanger sequencing?

Sanger sequencing, also known as the dideoxy chain termination method, is a pioneering technique for determining the order of nucleotides (A, C, G, T) in a DNA molecule. Developed by Frederick Sanger and his colleagues in 1977, it paved the way for modern DNA sequencing methods.

What are the key features of Sanger sequencing?

  • Chain Termination: Sanger sequencing utilizes specially modified DNA nucleotides with dideoxynucleotides (ddNTPs) lacking a 3' hydroxyl group. When a ddNTP is incorporated into the growing DNA chain, it terminates further elongation.
  • Four Reactions: The method involves running four separate reactions, each containing one type of ddNTP along with the normal dNTPs and a DNA primer. Each reaction stops at a specific point based on the incorporated ddNTP, revealing the base at that position.
  • Gel Electrophoresis: The fragments generated in each reaction are then separated by size using gel electrophoresis. By analyzing the banding pattern,
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What is genomics?

Genomics is the scientific exploration of an organism's entire genetic makeup, its genome. This encompasses not just the genes that code for proteins, but all the DNA, including regions with yet-to-be-understood functions. What are the key features of genomics?

  • Massive Data: Genom...

What is mitosis?

Mitosis is a fundamental process by which a eukaryotic cell duplicates its genetic material (DNA) and divides to form two daughter cells. These daughter cells are genetically identical to the parent cell and possess the same number of chromosomes. What are the key features of mitosis?

  • ...

What is meiosis?

Meiosis is a specialized cell division process that shuffles genetic material to create four genetically unique daughter cells, each with half the number of chromosomes compared to the parent cell. This process is vital for sexual reproduction in eukaryotes. What are the key features of meiosis...

What is sexual reproduction?

Sexual reproduction is a mode of reproduction that involves the fusion of genetic material from two different parents to create offspring. This process results in offspring with a unique combination of genes, leading to genetic variation within a population. What are the key features of sexual ...

What is transcriptomics?

Transcriptomics is the field of science devoted to studying the transcriptome. The transcriptome is the entire collection of RNA molecules within a cell, tissue, or organism at a specific point in time. It essentially represents a snapshot of the genes that are currently being expressed, offering a ...

What is proteomics?

Proteomics is the science dedicated to comprehensively studying proteomes. A proteome refers to the entire set of proteins produced by an organism, system, or even a specific cell at a particular time. Unlike genes in genomics, which remain relatively constant, the proteome is dynamic and reflects t...

What is metabolomics?

Metabolomics delves into the fascinating world of metabolites. These are the small molecule substrates, intermediates, and products of cellular metabolism, the intricate network of chemical reactions keeping organisms alive. By studying the metabolome, the complete collection of metabolites within a...

What is a plasmid?

Plasmids are fascinating extrachromosomal DNA molecules found in bacteria, and sometimes in archaea and eukaryotes. Unlike chromosomal DNA, which holds the essential blueprint for an organism, plasmids are independent genetic elements that can replicate on their own. What are the key features of pla...

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Archelon

Archelon is dedicated to protecting the sea turtle in Greece.

Para La Tierra

Para La Tierra dedicates itself to conserving fragile habitats in Paraguay.

Oliver Ridley Project

The Oliver Ridley Project is a charity that focusses on protecting sea turtles. on four project locations they educate local people, rescue injured turtles, cleaning the ocean from fishing nets, and do scientific research to better understand the life and needs of healthy sea turtle populations...

Stichting Chimbo

Stichting Chimbo zet zich in voor het behoud en eventueel herstel van de chimpansee populatie in West-Afrika en de natuurlijke omgeving waarin ze leven.

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What is biological sciences?

Biological sciences, also commonly referred to as biology, is the overarching field dedicated to studying life on Earth in all its forms. It encompasses a vast array of disciplines, each focusing on different aspects of living organisms. What are the main features of biological sciences?

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Summary: Essential Cell Biology (Alberts et al) - Second part

This summary is based on the 3rd edition of Essential Cell Biology from Alberts et al. The first 10 chapters are open access and can be found here: First part of the summary

  • 11. Membrane structure
  • 12. Membrane transport
  • 13. How cells obtain energy from food
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What is biological sciences?

Biological sciences, also commonly referred to as biology, is the overarching field dedicated to studying life on Earth in all its forms. It encompasses a vast array of disciplines, each focusing on different aspects of living organisms. What are the main features of biological sciences?

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Summary: Essential Cell Biology (Alberts et al) - First part

This summary is based on the 3rd edition of Essential Cell Biology from Alberts et al. The remaining chapters can be accessed when logged in and can be found here: Second part of the summary

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