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What is a phylogenetic tree?
A phylogenetic tree, also known as a phylogeny or evolutionary tree, is a powerful tool that visually depicts the evolutionary relationships between organisms. It's like a family tree for all living things, but instead of parents and children, it shows how species have descended from a common ancestor over time.
What are the main features of a phylogenetic tree?
- Branching Pattern: The branching pattern of the tree reflects the evolutionary history of the represented organisms. The further two species diverge on the tree, the longer ago their common ancestor lived.
- Nodes and Branches: Branching points (nodes) represent the divergence of ancestral lineages into new species. The lengths of branches can sometimes indicate the amount of evolutionary change that has occurred. (Note: Branch lengths don't always signify time in some trees).
- Rooted vs. Unrooted: Rooted trees have a designated root representing the most recent common ancestor of all organisms in the tree. Unrooted trees simply focus on the branching relationships without specifying a single root.
Why is a phylogenetic tree important?
- Phylogenetic trees provide a framework for understanding how life has diversified on Earth.
- They help us trace the origin and evolution of specific species and their traits.
- Phylogenetic trees are crucial in various fields like medicine, ecology, and conservation biology.
What are applications of a phylogenetic tree in practice?
- Drug Discovery: By understanding the evolutionary relationships between organisms, researchers can identify potential drug targets based on similarities with existing drugs effective against related species.
- Antimicrobial Resistance: Phylogenetic trees help track the spread of antibiotic-resistant bacteria, allowing scientists to develop more targeted interventions.
- Conservation Biology: Studying the evolutionary relationships of endangered species helps identify those with unique evolutionary lineages, informing conservation priorities.
Practical example
Imagine a phylogenetic tree depicting various mammal species. We might see a branch leading to primates, with further branching within that group separating humans from chimpanzees, our closest relatives. This branching pattern reflects the shared ancestry of all mammals and the gradual divergence of these species over time.
Critical comments
- Phylogenetic trees are based on the data used to construct them. Different data sets (DNA, proteins) can sometimes lead to slightly different tree topologies.
- Interpreting branch lengths as time can be misleading in some trees, depending on the construction method.
- Phylogenetic trees represent our current understanding of evolutionary relationships, which can be refined as new data emerges.
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Study guide with flashcards and definitions with Genomics at Utrecht University
Flashcards and definitions with Genomics
Online flashcards with Genomics
- Centromere
- Chromatides
- Chromosomes
- Sex chromosomes
- Asexual reproduction
- Sexual reproduction
- Mitosis
- Meiosis
- Genomics
- Transcriptomics
- Proteomics
- Metabolomics
- Plasmid
- Polymerase Chain Reaction
- Next Generation Sequencing
- Sanger sequencing
- RNA-sequencing
- CRISPR-Cas9
- Forward genetic screens
- Reverse genetic screens
- RNA interference
- Bioinformatics
- DNA replication
- DNA mutation
- Evolution
- Horizontal gene transfer (HGT)
- Virus
- Microsatellites
- Basic Local Alignment Search Tool (BLAST)
- Findable, Accessible, Interoperable, and Reusable data (FAIR data)
- Phylogenetic tree
- Insertion
- Deletion
- For flashcards and definitions, see the supporting content of this study guide
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Genomics: The best concepts summarized
Genomics: The best concepts summarized
Table of contents
- Centromere
- Chromatides
- Chromosomes
- Sex chromosomes
- Asexual reproduction
- Sexual reproduction
- Mitosis
- Meiosis
- Genomics
- Transcriptomics
- Proteomics
- Metabolomics
- Plasmid
- Polymerase Chain Reaction
- Next Generation Sequencing
- Sanger sequencing
- RNA-sequencing
- CRISPR-Cas9
- Forward genetic screens
- Reverse genetic screens
- RNA interference
- Bioinformatics
- DNA replication
- DNA mutation
- Evolution
- Horizontal gene transfer (HGT)
- Virus
- Microsatellites
- Basic Local Alignment Search Tool (BLAST)
- Findable, Accessible, Interoperable, and Reusable data (FAIR data)
- Phylogenetic tree
- Insertion
- Deletion
Summaries and supporting content:
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Public
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Summaries and Study Assistance - Start
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